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  2. B Cell Repertoires
  3. alakazam

Issues

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Issues (1–25 of 40)

Title T P Status Votes Assignee Milestone Created Updated Actions
#108: Using multiple columns as groups in alphaDiversity
enhancement major open
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#106: change groupGenes only_heavy default from T to F
bug major new
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#102: update estimateAbundance, plotAbundanceCurve to work with mixed data
enhancement major new
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
#97: Bioconductor packages don't install automatically
bug major new
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#85: IgPhyML lineage tree analysis does not work with test data
bug major resolved
#84: Help understanding diversity tests at a fixed diversity order
proposal major resolved
#83: groupGenes doesn't support TCR data
bug major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#76: Document use of collapseDuplicates outside of makeChangeClone
enhancement major new
#62: collapseDuplicates
bug major resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#52: seqDist crashes on Mac
bug major resolved
#46: Reduce example run times
bug major wontfix
#48: Add saturation curves
enhancement major new
#19: Incorporate prototype-topology package
enhancement major resolved
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#40: Example column names
bug major resolved
#11: Need to validate the significance tests in testDiversity
task major new
#41: Alakazam with older R version
proposal major resolved
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