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  2. B Cell Repertoires
  3. alakazam

Issues

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Issues (1–25 of 40)

Title T P Status Votes Assignee Milestone Created Updated Actions
#98: R CMD check is too slow for CRAN
bug blocker new
#106: change groupGenes only_heavy default from T to F
bug major new
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#97: Bioconductor packages don't install automatically
bug major new
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#85: IgPhyML lineage tree analysis does not work with test data
bug major resolved
#83: groupGenes doesn't support TCR data
bug major resolved
#62: collapseDuplicates
bug major resolved
#52: seqDist crashes on Mac
bug major resolved
#46: Reduce example run times
bug major wontfix
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#40: Example column names
bug major resolved
#36: Won't build on R < 3.2.0
bug major resolved
#35: Changes required for CRAN resubmission
bug major resolved
#32: R CMD check NOTES:
bug major resolved
#22: Gravy error from R CMD Check
bug major resolved
#3: testDiversity generates one-sided p-values and it should be two-sided
bug major resolved
#103: groupGenes needs updated naming and to figure out the locus list.
bug minor resolved
#105: ylim argument in plotAbundanceCurve has no effect
bug minor resolved
#91: basic, acidic and aromatic output fields from aminoAcidProperties() are always zero
bug minor resolved
#90: NA row for geneCounts() on d_call
bug minor resolved
#89: getSegment doesn't work for C-regions
bug minor resolved
#87: writeChangeoDb() puts NA for null/blank values
bug minor invalid
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