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Issues (26–50 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#79: Issue is plotting output from estimateAbundance function using ExampleDb dataset
bug minor resolved
#74: Remove NSE from gather call in combineIgphyml
bug minor resolved
#72: Replace gridPlot with cowplot:plot_grid
enhancement minor new
#70: error and warning messages from plotDiversityCurve()
bug minor resolved
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance
enhancement minor resolved
#64: Make length mismatch warning more meaningful in makeChangeoClone
enhancement minor resolved
#65: countGenes in Gene.R
enhancement minor resolved
#67: changing tmp directory buildPhylipLineage
bug minor resolved
#63: Clarification to using indirect=TRUE in testEdges
bug minor resolved
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#33: getGene returns first not Not Localized results
proposal minor resolved
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#28: Add CDR3 and FRW4 to extractVRegion
enhancement minor wontfix
#34: More diversity plots
enhancement minor resolved
#61: See if there is way to add dispatching to plotAbundance
enhancement minor resolved
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#60: Allow non-uniform sampling in rarefyDiversity
enhancement minor resolved
#56: `readChangeoDb` fails when input file contains non-standard column names
bug minor resolved
#16: Add annotation collapse without duplicate removal to collapseDuplicates
enhancement minor resolved
#47: Write test for distToNearest when seq has stop codon
task minor invalid
#50: getSegment automatically strips D from names
proposal minor invalid
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#45: Gene usage and RDI vignette
enhancement minor resolved
#37: Conversion to stringi
enhancement minor wontfix
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