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  3. alakazam

Issues

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Issues (26–50 of 55)

Title T P Status Votes Assignee Milestone Created Updated Actions
#60: Allow non-uniform sampling in rarefyDiversity
enhancement minor resolved
#56: `readChangeoDb` fails when input file contains non-standard column names
bug minor resolved
#16: Add annotation collapse without duplicate removal to collapseDuplicates
enhancement minor resolved
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#45: Gene usage and RDI vignette
enhancement minor resolved
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong
bug minor resolved
#38: Add tigger gene ordering function
enhancement minor resolved
#43: Add clone subsetting to countGenes
enhancement minor resolved
#39: Consider having readChangeoDb wrap fread() instead of read.table()
enhancement minor resolved
#21: Add evenness to diversity output
enhancement minor resolved
#31: R CMD Check warning
enhancement minor resolved
#17: Move amino acid analysis from repertoire into main alakazam package
enhancement minor resolved
#24: R CMD Check gravy warning
enhancement minor resolved
#13: Cannot knit lineage vignette pdf
bug minor resolved
#23: R CMD Check igraph warning
enhancement minor resolved
#9: Outstanding `R CMD check` warnings
bug minor resolved
#4: readChangeoDb should probably convert all columns to character type
enhancement minor resolved
#8: Remove globals for default colors
enhancement minor resolved
#5: collapseDuplicates could use binary distance instead for speed
enhancement minor resolved
#87: writeChangeoDb() puts NA for null/blank values
bug minor invalid
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#47: Write test for distToNearest when seq has stop codon
task minor invalid
#50: getSegment automatically strips D from names
proposal minor invalid
#42: getSeqMatrix vs getDistanceMatrix
enhancement minor invalid
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