MakeDb: IgBLAST records with no D-gene assignment are treated as 'partial'

[William Lees]

The last sequence in the attached files is parsed by IgBLAST (and IMGT V-quest) as having no determinable D-gene: IgBLAST does identify the junction and CDR3. MakeDb.py writes the record to the 'failed' file unless --partial is specified, and does not identify the junction or CDR3. MakeDb.py should identify the junction, and write the record to the 'pass' file as it represents an entire V-region sequence.

Changeo version: 0.3.7 (2017.06.30) IgBLAST version: 1.7.0, build May 6 2017 17:13:23 Command to reproduce: MakeDb.py igblast -i igblast.out -s Final_collapse-unique.fasta -r $IGBLAST/ref/imgt_human_IG[VDJ].fasta --regions --scores --failed

[William Lees]

Apologies - I think this is an issue in my germline repo

[Jason Vander Heiden]

Ah, okay. If it pops up again, let me know.