Verify indexing for functions
Issue #117
resolved
Need a careful check for the indexing scheme everywhere.
In particular, verify whether Parsers.padAlignment
takes 0-based or 1-based indexes.
Indexes are stored in Receptor.Receptor
are currently 1-based closed intervals like the IgBLAST and IMGT/HighV-QUEST, but we probably want to swap this to 0-based open intervals like native python and the AIRR standard.
That'll be tedious, but... I think it needs doing.
Comments (2)
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reporter -
reporter - changed status to resolved
Some inconsistency still, but it's documented. Will wait on any airr standard changes before modifying.
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Parsers.padAlignment
is 0-based indexing.