- changed status to resolved
Use yaml via -y to support additional Biosample attributes
Issue #135
resolved
1) For ConvertDb.py genbank
, it could be very useful to allow support for additional Biosample attributes that are currently not specified through the command line options by supplying them in the yaml file via -y
. Currently, supplying the yaml file is just another way to supply attributes through the command line (as opposed to supporting additional attributes).
2) On a related note, the current tutorial could be clearer in stating that the -y
option does not support additional, unspecified Biosample attributes.
Comments (1)
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In 5bbf182. Changed the behavior of the
-y
argument in thegenbank
subcommand. This argument is now featured to sample features only, but allows for the inclusion of any BioSample attribute. Added clarifications to the docs.