- changed status to resolved
BuildTrees.py - output not usable by IgPhyML when --outname begins with a number
Moved from issue originally opened by @heumos in the immcantation
repo.
Hi Kleinstein-Lab,
please prevent users from putting numbers in front of their --outname argument or else the files is malformed and not usable by IgPhyML anymore. I just ran into that issue and it took me some time to figure out, what was going on.
Example code, that produces malformed file:
BuildTrees.py -d example.tab --outname 1234_ex --log ex.log --collapse
Thanks!
Best, Simon
Or ideally you find a way, that user can name their output as they wish ;)
Comments (4)
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@javh since this is an important bug, do you think we should go ahead and change this in the released version?
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I think it would be good to get it into release as soon as you can, because it does break BuildTrees. But, I would also resolve
#139,#140, and#141and package them all into the same release (v0.4.5). Those are all important and having one fix is a good impetus to fix other things to justify release. :) -
Thanks for the fix!
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Number of clones did not print newline, resulting in improperly formatted lineages file. This has been fixed in the development version.