Maybe merge extended field arguments in MakeDb
Issue #148
resolved
We currently have several arguments for adding a more verbose column set to the output of MakeDb (--scores
, --regions
, --cdr3
,--junction
) and there seems to be little reason to not specify all of them if you specify one. Also, I think we may need a similar option for the 10X annotations to be able to copy over, but not replace, the locus and gene calls.
It would be a backwards incompatible change, but it might be worth it to merge all such options into an --extended
flag, such that we have a single “verbose output” argument that isn’t dependent upon the input files or subcommand.
Comments (2)
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reporter -
reporter - changed status to resolved
Done in 2b104e2. Also added extended fields for 10X data.
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Unless anyone has any objections to this, I think I’m going to go ahead and do it prior to the format conversion.