All `GERMLINE_IMGT` appear to be `NA` from `MakeDb.py imgt` v0.4.5
Issue #149
resolved
Same input from IMGT High/V-QUEST
- IMGT/HighV-QUEST version: 1.6.6 (24 April 2019) IMGT/V-QUEST version: 3.4.17 (19 February 2019) IMGT/V-QUEST reference directory release: 201915-3 (10 April 2019)
Same call to MakeDb.py imgt
and ParseDb.py split
(to separate productive and non-productive)
Different tab files for productive sequences:
- Change-O v0.4.3:
GERMLINE_IMGT
: noNA
; no"”
- Change-O v0.4.5:
GERMLINE_IMGT
: allNA
; no"”
Comments (5)
-
-
reporter Wait - are you saying I should update change-o and try again with the latest pull first (before sending data that causes the problem)?
-
Yep. “tip” = “most recent commit”.
-
reporter Tried tip and got all the
GERMLINE_IMGT
asNA
still.. Sending you an email with the call and data files.. -
reporter - changed status to resolved
Major mistake on the part of reporter: only supplied IGHV.fasta to
-r
, and not IGH[DJ]. Must supply all V, D, and J. - Log in to comment
I tried with tip and it seemed to work fine... After I fixed a bug that caused the
imgt
subcommand to fail entirely. I just used the imgt file in `tests/data`. If it still doesn't work, send me a set of files that has the problem and I'll fix it.