ConvertDB airr removes junction_length

[Kenneth Hoehn]

Running ConvertDB.py airr on a Changeo formatted dataset containing column JUNCTION_LENGTH does not contain column junction_length.

[Jason Vander Heiden]

I just pushed a fix. Can you test ConvertDb-airr and ConvertDb-changeo, please?

[Kenneth Hoehn]

ConvertDb-airr worked great. Converting back to changeo led to multiple duplicated columns. Got this message while reading it into Alakazam:

1: Duplicated column names deduplicated: 'V_SEQ_LENGTH' => 'V_SEQ_LENGTH_1' [47], 'V_GERM_LENGTH_VDJ' => 'V_GERM_LENGTH_VDJ_1' [51], 'V_GERM_LENGTH_IMGT' => 'V_GERM_LENGTH_IMGT_1' [52], 'D_SEQ_LENGTH' => 'D_SEQ_LENGTH_1' [53], 'D_GERM_LENGTH' => 'D_GERM_LENGTH_1' [54], 'J_SEQ_LENGTH' => 'J_SEQ_LENGTH_1' [55], 'J_GERM_LENGTH' => 'J_GERM_LENGTH_1'

[Jason Vander Heiden]

Ok, I just pushed attempt 2.

[Kenneth Hoehn]

That worked! Both conversion to airr and from airr to changeo.

[Jason Vander Heiden]

Done in 7f9a31f