ConvertDB airr removes junction_length
Issue #158
resolved
Running ConvertDB.py airr
on a Changeo formatted dataset containing column JUNCTION_LENGTH
does not contain column junction_length
.
Comments (5)
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reporter ConvertDb-airr worked great. Converting back to changeo led to multiple duplicated columns. Got this message while reading it into Alakazam:
1: Duplicated column names deduplicated: 'V_SEQ_LENGTH' => 'V_SEQ_LENGTH_1' [47], 'V_GERM_LENGTH_VDJ' => 'V_GERM_LENGTH_VDJ_1' [51], 'V_GERM_LENGTH_IMGT' => 'V_GERM_LENGTH_IMGT_1' [52], 'D_SEQ_LENGTH' => 'D_SEQ_LENGTH_1' [53], 'D_GERM_LENGTH' => 'D_GERM_LENGTH_1' [54], 'J_SEQ_LENGTH' => 'J_SEQ_LENGTH_1' [55], 'J_GERM_LENGTH' => 'J_GERM_LENGTH_1'
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Ok, I just pushed attempt 2.
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reporter That worked! Both conversion to airr and from airr to changeo.
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- changed status to resolved
Done in 7f9a31f
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I just pushed a fix. Can you test ConvertDb-airr and ConvertDb-changeo, please?