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assigned issue to
Update IgBLAST example to include c_call
Issue #197
new
Update this script to include c_call:
https://bitbucket.org/kleinstein/changeo/src/master/docs/examples/scripts/IgBLAST_Commands.sh
Comments (2)
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reporter -
reporter # Constant region database edit_imgt_file.pl IMGT_Human_IGHC.fasta > ~/share/igblast/fasta/imgt_human_ig_c.fasta makeblastdb -parse_seqids -dbtype nucl -in ~/share/igblast/fasta/imgt_human_ig_c.fasta \ -out ~/share/igblast/database/imgt_human_ig_c.fasta
Results in error:
BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|IGHA1*01
But it works if we replace the
edit_imgt_file.pl
step and use our scriptclean_imgtdb.py
instead to prepare the-in
sequences.
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