Update IgBLAST example to include c_call

Issue #197 new
ssnn created an issue

Comments (2)

  1. ssnn reporter
    # Constant region database
    edit_imgt_file.pl IMGT_Human_IGHC.fasta > ~/share/igblast/fasta/imgt_human_ig_c.fasta
    makeblastdb -parse_seqids -dbtype nucl -in ~/share/igblast/fasta/imgt_human_ig_c.fasta \
        -out ~/share/igblast/database/imgt_human_ig_c.fasta
    

    Results in error:

    BLAST Database creation error: Error: Duplicate seq_ids are found: 
    LCL|IGHA1*01
    

    But it works if we replace the edit_imgt_file.pl step and use our script clean_imgtdb.py instead to prepare the -in sequences.

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