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assigned issue to
CreateGermlines.py provides incorrect germline
Issue #22
resolved
I was looking at mutation frequencies for a dataset and found about ~10% to be highly mutated (in the range of 40%). These sequences are functional and not really mutated that much. However, the GERMLINE_GAP_D_MASK sequence is totally off!
The IMGT zip file can be found here: /scratch2/kleinstein/klarenbeek_gut/data2.0/03.IMGT/Healthy_Ig/Healthy_Ig_part000001.zip
I'm attaching a TAB file containing a few of these sequences
Comments (2)
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reporter - changed status to resolved
Updating to latest version of ChangeO + using the latest IMGT repertoire fixes this issue.
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