TypeError (on attempt to iterate over db_gen instance )
here's the end of the traceback: if 'SEQUENCE_ID' in db_gen and db_gen['FUNCTIONAL'] != 'No Results': TypeError: argument of type 'instance' is not iterable
(posted error message and files here) rather large files posted to s3://AbVitro_Kleinstein_shared/changeo_issue29/ with access granted to keihoi.cheung@gmail.com
My repo is updated:
5270 changeo$ hg parent changeset: 113:70e03e9ec005 tag: tip user: Jason Vander Heiden jason.vanderheiden@yale.edu date: Thu Apr 02 18:55:58 2015 -0400 summary: 1. Added more fleshiness to GapSeq.
Comments (3)
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- attached CR0019EB_N4.output.fmt7
- attached CR0019EB_N4.fasta
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- changed status to resolved
I fixed this a bit ago, but forgot to close the issue. Also fixed a few other things in the process, such as cases where IgBLAST (for inexplicable reasons) will make an alignment call but not assign CDR and FWR positions.
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Problem seems to be two sequential "# 0 hits found" records. Attached a subset of the records that reproduces the issue.