- changed status to resolved
How does DefineClones deal with non-nuc characters
Issue #34
resolved
Finally, for some reason my file has a few locations where the junction is recorded as the string "None", and this was being treated as an actual junction.
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Now any character not considered in your given model's distance matrix (e.g., IUPAC ambiguous DNA for hamming, 'ACGTN.-' for hs5f) will give an error when trying to look up the distance in the model's distance matrix.