Extension of distance matrix doesn't properly account for ambiguous characters
Issue #36
resolved
Character matches that are in the ACGTN-.
character set are currently being defined as Infinite distance when extending an existing matrix in getDNADistMatrix() and getAADistMatrix(). Should be better, probably by averaging the input distances over the ambiguous set.
Comments (7)
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reporter -
I don't know who is best for working on this, but it is no longer me :) Please reassign!
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This looks resolved. Please confirm.
@Jason Vander Heiden
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- marked as enhancement
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reporter - changed status to resolved
Looks good to me.
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Ambiguous character support also seems to be missing from hs1f and m1n models.