How should X be scored in DefineClones?
Issue #38
resolved
Currently, X is a mismatch in the 'aa' model of DefineClones... Correct?
Comments (2)
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reporter -
reporter - changed status to resolved
No one knows, so I'm leaving the change in behavior such that an X matches any character.
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I changed the default so that X and gap characters always count as a match in a3ac399... Pending some info as to why this is the way it is.