- edited description
ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type
Hi, I was just updating ChangeO to the latest revision and noticed that the MakeDb.py -r parameter is now required; the directory where we keep the germline sequences also has the .nog, .nsi, etc. files as well, so I get ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type
. Would it be possible to ignore these files rather than raise an exception?
Comments (5)
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reporter -
I thought we fixed this... We'll check.
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Hrm. Can you updated presto? The problem might be an older version of
presto.IO.getFileType()
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reporter Thanks for the feedback, indeed I was negligent about updating presto (we keep a requirements.txt file with entries like
hg+ssh://hg@bitbucket.org/abvitro/changeo/@292#egg=changeo
so that the presto and changeo versions are explicitly specified; in the future I will make sure to update both. It appears to work now, thank you! -
reporter - changed status to resolved
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