MakeDb igblast is not parsing pRESTO headers

[Namita Gupta]

Both parseIMGT() and parseIgBlast() have no_parse=True by default. This is then passed to writeDb(), which uses the flag to decide whether or not to parseAnnotation from record.id.

1. Figure out where the IMGT parser is setting no_parse=False
2. Give the IgBLAST parser consistent behavior

[Jason Vander Heiden]

This worked in v0.3.3. It looks like what happened is that at some poit this block:

if not no_parse:  ordered_fields.extend(list(record.annotations.keys()))
pass_handle = open(pass_file, 'wt')
pass_writer = getDbWriter(pass_handle, add_fields=ordered_fields)

Got moved up before the annotations were parsed, so record.annotations was empty.

[Namita Gupta]

Ohhh this was part of Susanna making the 'partial' file so a fail handle would exist farther up...

[Jason Vander Heiden]

I didn't check, but that seems likely. Luckily, these means we don't need to do a release after fixing it. Fixing it now.

[Jason Vander Heiden]

Should be fixed in 3b8043f. Will wait to hear from @schristley before resolving.

[Jason Vander Heiden]

Seems okay. We need to do a thorough test of MakeDb soonish.