- edited description
Flesh out MakeDb unit tests
We've made a lot of changes to MakeDb recently, and I think we need to decent suite of unit tests in place for MakeDb to test that the imgt, igblast and ihmm subcommands all behave consistently with the various flags.
Should include tests for IgBLAST v1.4, v1.5 and v1.6, IMGT output in old zip format or new txz format, and both B cell heavy/light and T cell beta/alpha chains.
There are a few more issues that we should probably cleanup before running in through rigorously. Particularly issues #81 and #85.
Comments (6)
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reporter -
reporter - edited description
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reporter - edited description
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reporter As of ae229b4, MakeDb-igblast is in a state that could be properly unit tested. Though, ideally,
readIgBlast
should be converted to a class. -
reporter Converted the igblast parsing operations to the class
IgBlastReader
in dbccd91, which will return either adict
orIgRecord
. Should make testing a lot easier. -
reporter -
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