IMGT changed column name from "Functionality" to "V-DOMAIN Functionality"

[Lisa Blum]

I ran "MakeDb.py imgt -i IMGTfile_out.txz -s IMGTfile_in.fasta" and got the following error:

Traceback (most recent call last): File "/usr/local/bin/MakeDb.py", line 1393, in <module> args.func(**args_dict) File "/usr/local/bin/MakeDb.py", line 1153, in parseIMGT out_args=out_args) File "/usr/local/bin/MakeDb.py", line 992, in writeDb for record in db_gen: File "/usr/local/bin/MakeDb.py", line 554, in readIMGT if 'No results' not in sm['Functionality']: KeyError: 'Functionality'

It looks like "Functionality" and "Functionality comment" in the 1_Summary.txt file are now "V-DOMAIN Functionality" and "V-DOMAIN Functionality comment", respectively. IMGT files # 2, 3, and 6 also have "Functionality" (now "V-DOMAIN Functionality") columns. No other headers appear to have changed.

Thanks!

Lisa

[Lisa Blum]

Nevermind -- I think you fixed this, and I just hadn't updated properly.

[Jason Vander Heiden]

Okay, cool. Yes, it should be fixed in v0.3.5. If you have any trouble please reopen and I'll take care of it when I get back in town next week.