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Issues

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Issues (26–50 of 112)

Title T P Status Votes Assignee Milestone Created Updated Actions
#89: Clone identification with only TCRA data
bug major resolved
#90: Update `changeo-10x.sh` to match the new workflow in the tutorial
task major resolved
#87: A question about Dowser function`getSubclones`: how to specify subclone designation for heavy+light chain clones
documentation
bug major new
#86: Error with MakeDb.py to parse IMGT output
bug minor new
#74: AssignGenes.py input file
enhancement major resolved
#85: 10x light chain question
enhancement major resolved
#84: Light chain germline and mutational analysis
enhancement major new
#83: ERROR> Error building reference database for aligner
bug major resolved
#82: Add option to phix pipeline to use 'generic' for users that have done some preprocessing of reads
enhancement trivial new
#81: Chimeric sequencing step
enhancement major new
#80: Add argument to disable temp file zipping/deletion
UX
enhancement minor resolved
#79: Update containers to use germlines in IMGT march '21 release
task major resolved
#77: which tool to use to get full aminoacid sequences of heavy and light chains?
proposal major new
#76: fetch_imgtdb.sh empty V files
bug major resolved
#75: Add pRESTO tutorial to training section
task minor new
#72: Review doc links behaviour
task minor new
#73: fetch_igblastdb.sh script has old NCBI URLs for internal_data and optional_file
bug minor resolved
#70: Review and update the wiki
task minor new
#69: Replace run_igblast with AssignGenes in pipelines
enhancement trivial resolved
#57: Fix the /data:z links being created
UX
bug trivial resolved
#33: All packages issue - add go back to Immcantation main
enhancement minor open
#20: Deploy docker container on Illumina BaseSpace
enhancement major open
#18: Move example data
enhancement minor open
#16: Create set of full pipeline tests
enhancement major open
#9: Reduce size of docker images
enhancement minor open
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