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Issues (1–25 of 92)

Title T P Status Votes Assignee Created Updated Actions
#92: Output of AssemblePairs.py sequential and align is the same
bug critical resolved 1
#91: Bio.pairwise2 deprecation
bug major resolved
#90: create pyproject.toml
task major resolved
#89: Huge processing times for CollapseSeq
bug major new
#81: Jiang 2013 example script incompatible with Mac OS
proposal minor new
#15: error during AlignSets
bug minor resolved
#88: Add U to T character mapping in scoring functions
enhancement trivial resolved
#87: Add unique identify to start of read names for downstream analysis
enhancement minor resolved
#84: Manage special characters in the header annotations
enhancement major resolved
#82: Option to increase cd-hit-est memory limit
enhancement major resolved
#72: error in Multiprocessing.py with singularity
bug major resolved
#83: Fatal `EstimateError.py set` error after progress bar reads 100%
bug critical resolved
#85: UMI is known but primers are not
enhancement major resolved
#74: Redesign CollapseSeq algorithm
enhancement major new
#86: AssemblePairs.py sequential fails when input file lists are added under the '-1' and '-2' arguments.
bug minor resolved
#80: Is the pip3 install broken on macOS?
bug major resolved
#79: AssemblePairs.py align -1 ERR346600_2.fastq -2 ERR346600_1.fastq
bug major resolved
#78: Usage on bulk RNA-seq samples
proposal major resolved
#16: Reduce multiprocessing overhead
enhancement minor new
#77: Bio.Alphabet import error for Biopython 1.78
bug major resolved
#76: Incompatibility with biopython v1.78
bug major resolved
#75: Applications.py using a deprecated method from Bio
bug major resolved
#42: MaskPrimers-align edge cases are not masking correctly
bug major new
#71: AssemblePairs get stuck
task minor duplicate
#70: Read quality = 0 stops FilterSeq
bug trivial resolved
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