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BuildConsensus log output doesn't convey --maxmiss results

Issue #3 resolved
Jason Vander Heiden created an issue

When --maxmiss flag is specified BuildConsensus log does not align output sequence deleted positions within input sequence. Log should be improved to make it clear which positions were deleted by using a space or - character.

Comments (1)

  1. Jason Vander Heiden reporter

    Fixed by adding spaces to deleted nucleotide and quality positions in the CONSENSUS field of BuildConsensus the log file.

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bug
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minor
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resolved
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