runUClust supports vsearch 2.4.2 but not usearch v9.2
Issue #52
invalid
For runUClust in presto.Applications to take usearch v9.2 as an argument, the following change must be made to cmd...
cmd = [cluster_exec,
'-cluster_fast', in_handle.name,
'-uc', out_handle.name,
'-id', str(ident),
'-qmask', 'none',
'-minseqlength', '1',
'-threads', '1']
cmd = [cluster_exec, '--usersort',
'--input', in_handle.name,
'--uc', out_handle.name,
'--id', str(ident),
'-minlen', '1']
Comments (2)
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-
- changed status to invalid
Seeing as I can't reproduce, I'm closing this. Please reopen if it pops up.
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I can't reproduce. usearch v9.2.64 seems to generate the same output as 9.0.2132.
Also, I don't see anything in the release notes about argument changes?
I only did a simple test by running ClusterSets on the same data using different versions. Are you getting this error a different way?