- changed status to resolved
Cloning fails on single-cell TCR data
Issue #18
resolved
Looks like everything is hardcode to IGH, IGL and IGK. The code should work for TCR data as well (TRB, TRD, TRA, TRG).
The problem is also present in the single-cell modes for alakazam::groupGenes
and shazam::distToNearest
. It may not be essential to fix this in distToNearest
, but I also don’t see a reason not to fix it because you may want to use distToNearest
on TCR data for purposes other than clonal clustering.
The only_igh
argument should probably be changed accordingly, so as not to be confusing. only_heavy
would be better - still wrong, but less wrong.
Comments (2)
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reporter Seems to be working now. Thanks!
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Resolved by c126339