- edited description
-
assigned issue to
plotInterVsIntra causing error
Issue #7
resolved
Some kind of density estimate issue, having to do with the data being small/sparse.
Error message:
Error in density.default(a, from = xlim[1], to = xlim[2]) :
need at least 2 points to select a bandwidth automatically
Traceback:
7.
stop("need at least 2 points to select a bandwidth automatically")
6.
density.default(a, from = xlim[1], to = xlim[2])
5.
density(a, from = xlim[1], to = xlim[2]) at Functions.R#380
4.
as.data.frame(density(a, from = xlim[1], to = xlim[2])[c("x",
"y")]) at Functions.R#380
3.
merge(as.data.frame(density(a, from = xlim[1], to = xlim[2])[c("x",
"y")]), as.data.frame(density(b, from = xlim[1], to = xlim[2])[c("x",
"y")]), by = "x", suffixes = c(".a", ".b")) at Functions.R#380
2.
plotInterVsIntra(data = results$inter_intra) at Functions.R#954
1.
defineClonesScoper(db = db, model = "spectral", method = "vj",
germline_col = "h_GERMLINE_IMGT", sequence_col = "h_SEQUENCE_IMGT",
junction_col = "h_cdr3", v_call_col = "h_v", j_call_col = "h_j",
clone_col = "CLONE", first = F, cdr3 = F, mod3 = F, nproc = NPROC, ...
Comments (3)
-
reporter -
reporter Can be by-passed by skipping `p_results <- plotInterVsIntra(data = results$inter_intra)`
-
- changed status to resolved
resolved by 7f13fd2.
- Log in to comment