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  3. shazam

Issues

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Issues (1–25 of 145)

Title T P Status Votes Assignee Milestone Created Updated Actions
#142: make sure default is AIRR standard
task major resolved
#139: Rename IMGT_ALL to IMGT_VDJ
task major resolved
#146: observedMutations error message SHazaM
bug major new
#143: consolidate observedMutations
task major new
#141: consolidate collapseClones, to avoid multiple functions
task major new
#140: rename collapseClonesL
proposal major closed
#144: consolidate calcBaseline
task major new
#145: Test groupBaseline still works, with the new calcBaseline
task major new
#137: createTargetingModel docs are crazy
bug trivial resolved
#138: calcObservedMutations isn't handling germline gaps correctly
bug major resolved
#136: distToNearest doesn't support TCR data
bug major resolved
#135: CDR3 region definition
enhancement major new
#134: function to find clonotypes based on clonotypes
proposal major new
#133: Saved TargetingModel objects out-of-date with the object structure
bug major resolved
#132: distToNearest won't work if V_CALL or J_CALL are factors
bug minor resolved
#131: add single cell example data
task major new
#121: distToNearest plots should not show negative values
bug major resolved
#122: fix targeting models empty tests
bug major resolved
#120: data_frame is deprecated
bug trivial resolved
#130: Review NEWS and vignettes
task major resolved
#128: better error message for distToNearest
bug major closed
#111: Improve performance of observedMutations
enhancement minor on hold
#129: Add number of mutations used for building targeting models in output
enhancement minor resolved
#119: Add to shmulateSeq option to specify mutations in percent
proposal minor resolved
#83: groupBaseline - Profile memory usage
task major new
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