groupBaseline returns list_GroupPdfs, should be sorted_list_GroupPdfs?

[ssnn]

@javh @jqz Do you think this line is correct? I am not familiar with the code, but I have noticed sorted_list_GroupPdfs exists

This is line 1089 in Baseline.R, inside groupBaseline()

return( c( list_GroupPdfs[[1]], as.numeric(sorted_numbOfSeqs_region) ) )

[Julian Zhou]

Not familiar with this part of the code either. But I looked through it a bit and it seems to be right actually.

In the repeat loop immediately above the line you pasted, i.e. inside

if(length(list_GroupPdfs)>1){
                        repeat{

These seems to be constant update to list_GroupPdfs based on each new iteration of sorted_list_GroupPdfs:

list_GroupPdfs <- sorted_list_GroupPdfs
sorted_list_GroupPdfs <- list()

So it seems to make sense to return the final version of list_GroupPdfs that contains all iterations of updates from sorted_list_GroupPdfs.

I didn't trace this super carefully, but that looks like the case..

[Jason Vander Heiden]

Sounds good to me.