Grouping section of the selection vignette is unclear

Issue #112 resolved
Jason Vander Heiden created an issue

The first section of Group and convolve individual sequence PDFs could use more clarity. There are two different grouping approaches in a single code block, which is kind of misleading.

Needs some cleanup and organization.

Also, the second calcBaseline call looks like it should be taking clones_sub instead of clones as the input.

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