- changed status to resolved
distToNearest doesn't support TCR data
Issue #136
resolved
Looks like everything is hardcode to IGH, IGL and IGK. The code should work for TCR data as well (TRB, TRD, TRA, TRG).
The problem is also present in the single-cell modes for alakazam::groupGenes
. It may not be essential to fix this in distToNearest
, but I also don’t see a reason not to fix it because you may want to use distToNearest
on TCR data for purposes other than clonal clustering.
The groupUsingOnlyIGH
argument should probably be changed accordingly, so as not to be confusing.
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Resolved by addca20