ObservedMutations for cdr3 regions
Issue #148
resolved
Dear Immcantation developers!
Thank you for this amazing software!
I wanted to ask if there is any way to have mutations count with observedMutations for cdr3 region, I can see that possible options for regionDefinition argument is only V genes regions, so it always gives only cdr2 and cdr1, any possibility of future plans to do it for the junction of the whole sequence?
Thank you a lot!
Comments (2)
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Hi! Thanks for reaching out. We are actually working on this feature in branch
extendedRegions
. We are adding two new region definitions,IMGT_VDJ
andIMGT_VDJ_BY_REGIONS
, to be used withobservedMutations
,expectedMutations
andcalcBaseline
. The plan is to have this ready for the next release of the framework, which should be happening in 1-2 weeks. I will get back to you then.