Update calcTargetingDistance

[Julian Zhou]

See comment by @javh in this issue :

"And we should update shazam::calcTargetingDistance accordingly as well."

(@javh: I don't know who wrote this function; feel free to change the assignee)

[Jason Vander Heiden]

Also, we'll need to update the distance matrices in changeo when we are done updating them in shazam, because changeo.DefineClones and shazam::distToNearest must use identical matrices.

[ssnn]

Are you going to fix distToNearest + tests? It is going to be more than updating the matrices names. I tried locally updating the h1sf matrix and the results are different, so this needs to be evaluated and changed as needed.

[Julian Zhou]

@ssnn I'll look into it this afternoon. Need to write some new functions first.

[Julian Zhou]

@ssnn @javh : I think I've updated all that need to be updated in shazam, including the tests. The pipeline built successfully.

@javh: As discussed, you will update the relevant distance matrices in CHANGE-O.