Column names for mutation counts and frequencies are inconsistent

Issue #87 resolved
Jason Vander Heiden created an issue

observedMutations outputs column names of the form:

  • Counts: OBSERVED_<Region>_<R/S>.
  • Frequencies: MU_FREQ_<Region>_<R/S>

I know this is because of BASELINe, but it's weird. Counts should be something like MU_COUNT_<Region>_<R/S>. Similarly, we should probably rename the expected mutation calls to something like MU_EXPECTED_<Region>_<R/S>

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