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Issues (51–75 of 165)

Title T P Status Votes Assignee Milestone Created Updated Actions
#123: Error when subsampling while calculating distToNearest between groups
bug major resolved
#115: Unnamed elements in S4 classes
bug blocker resolved
#117: fix test
bug blocker resolved
#114: Improve documentation for distToNearest subsampling
enhancement major resolved
#116: Fix error in example/check
bug blocker closed
#107: density method of findThreshold might need a bandwidth adjustment
enhancement minor resolved
#113: Remove subsample argument from findThreshold?
proposal trivial resolved
#112: Grouping section of the selection vignette is unclear
enhancement minor resolved
#110: Add subsampling to distToNearest
enhancement minor resolved
#101: create shazam::indexByUnion
proposal minor resolved
#109: make plotBaselineDensity work without warning for single-sequence input
bug major resolved
#108: Edit help text to make clear when some codons are excluded by observedMutations
task minor resolved
#97: Write test for distToNearest when seq has stop codon
enhancement minor resolved
#81: Update findThreshold docs for gmm/dens trade-offs
enhancement trivial resolved
#64: Mutation profiling and shmulate vignette
enhancement minor resolved
#106: groupBaseline returns list_GroupPdfs, should be sorted_list_GroupPdfs?
bug major resolved
#12: Add way to highlight specific 5-mers in mutability plots
enhancement minor resolved
#105: Add dispatch to plot for Baseline and TargetingModel objects
enhancement minor resolved
#52: Add RegionDefinition for full V-region
enhancement minor resolved
#6: Could use plotting functions for substitution and targeting
enhancement minor wontfix
#99: Conceptual Separation of By Regions vs. Whole CDR/FWR analysis
proposal trivial duplicate
#25: Add support for region definitions to targeting model code
enhancement major wontfix
#8: Expand baseline plots
enhancement major invalid
#4: Add method to subset Baseline objects
enhancement minor wontfix
#104: Write tests & run test on BASELINe for single-sequence input
task major resolved
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