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Issues (126–150 of 165)

Title T P Status Votes Assignee Milestone Created Updated Actions
#44: createTargetingModel needs '...' arguments
bug minor resolved
#3: Adding imputation to targeting model creation
enhancement major resolved
#32: Simultaneously calculate mutation counts and frequency
enhancement trivial invalid
#28: Maybe add regions and replacement/silent to mutation frequency count
enhancement minor resolved
#41: R CMD check: NOTE no visible binding for global variable
enhancement minor resolved
#47: binMutationsByRegion input can only be generated manually?
bug minor resolved
#46: calcObservedMutations return object is not consistent
bug major resolved
#49: We need to make sure all functions accept tbl_df objects
bug critical resolved
#50: calcBaseline fails when calcStats=T
bug major resolved
#51: Error processing Baseline-Vignette.Rmd
bug major resolved
#17: Compress demo file
enhancement trivial resolved
#42: C CMD check: tigger
bug trivial resolved
#37: R CMD Check import warning
enhancement minor resolved
#40: R CMD raises NOTE: deprecated license
proposal minor resolved
#24: Simplify some function names
enhancement trivial resolved
#39: Alakazam related
bug major resolved
#23: Update Calc(DB)ObservedMutations man pages
bug minor resolved
#35: swap reshape2 for tidyr
bug major resolved
#36: shm will not build vignettes if shm is not already installed
bug major resolved
#34: Swap plyr for dplyr
enhancement major closed
#38: R CMD Check vignette error
bug minor resolved
#33: calcObservedMutations with frequency=T and regionDefinition=NULL returns an extra column
bug major resolved
#30: Can we swap doSNOW for doParallel?
bug major resolved
#31: A bug in calcExpectedMutations (MutationProfiling.R)
bug major resolved
#29: listObservedMutations function does not have "multipleMutation" flag
bug major resolved
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