Duplicate assignment 'reassignAlleles' function

[Eadit Bernstein]

Hi After running reassignAlleles, in some rows I got the same V_CALL_GENOTYPED twice, for example:

Thanks Eadit

[Daniel Gadala-Maria]

Hi Eadit,

Thanks for reporting the error. Could you check if any of the sequences in the sequence_db input have multiple (comma-separated) allele names? This will help figure out if the issue is with reassignAlleles or with an earlier step.

Daniel

[Eadit Bernstein]

Hi I have only one line with multiple allele names, but it's not the duplicate one, (IGHV1-1801, but the duplicate one is IGHV3-2301) also in the geno table, in column 'Note', the note is: 'Cannot distinguish IGHV3-2301 and IGHV3-2301' Thanks Eadit

[Jason Vander Heiden]

No news is good news.