- edited description
Temporary workaround for weird dplyr bug
Issue #9
resolved
I temporarily disabled evaluation of findNovelAlleles
in the vignette because of an inexplicable error on R-devel preventing tigger from passing the CRAN pre-check:
* checking re-building of vignette outputs ... [17s] WARNING
Error in re-building vignettes:
Quitting from lines 111-116 (Tigger-Vignette.Rmd)
Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
task 10 failed - "Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL'"
I cannot reproduce the error using the rocker/r-devel
image. I suspect it's an incompatibility between dplyr
and the unstable R-devel build. For now, I did this:
{r, eval=FALSE, warning=FALSE}
# Detect novel alleles
novel_df <- findNovelAlleles(sample_db, germline_ighv, nproc=1)
We need to enable evaluation again ASAP, but I can't get it on CRAN as is and I can't reproduce to debug. So, I'm submitting with eval disabled and using the saved novel_df
object.
Comments (3)
-
reporter -
reporter We should also make sure this isn't a namespace conflict by converting all
@import
directives to@importFrom
directives. -
reporter - changed status to resolved
Converted everything to
@importFrom
. Seems to work fine on win-builder devel now. - Log in to comment