1. kleinstein-lab Avatar kleinstein-lab
  2. B Cell Repertoires
  3. tigger

Issues

Filter by:

Advanced search

Issues (1–25 of 39)

Title T P Status Votes Assignee Milestone Created Updated Actions
#35: inferGenotype should check if columns seq and v_call exist
task minor resolved
#34: Improve documentation for j_max in findNovelAlleles
task minor resolved
#33: plotNovel documentation needs to be improved
task minor resolved
#24: Release notes for v0.3.0 missing an important "Backwards Incompatible Refactors"
task major resolved
#32: Review NEWS and vignettes
task major resolved
#27: Add to news new arguments for airr compatibility
task major resolved
#26: Document description and return for subsampleDb
task major resolved
#25: Can updateAlleleNames be removed?
proposal major open
#19: Add an argument to inferGenotype to use the bayesian method
proposal major resolved
#15: Extend TIgGER beyond nt 312 (316, 319?)
proposal minor wontfix
#37: Document how to incorporate sequencing quality into the workflow of finding novel alleles
enhancement minor new
#31: Inconsistency in novel allele between genotype plot and evidence plot
enhancement major open
#21: Update example data with new columns
enhancement trivial resolved
#16: Add to inferGenotype output table info from findNovelAlleles output
enhancement major resolved
#13: Add additional evidence columns to findNovelAlleles output
enhancement major resolved
#10: Add to inferGenotype output table a column with % of the repertoire
enhancement minor resolved
#1: Low Sequence Counts
enhancement minor wontfix
#12: Modify reassignAlleles to output a db
enhancement major resolved
#4: Allow alternate sorting for genes and subjects in plotGenotype
enhancement trivial resolved
#39: Error in findNovelAlleles(db, germline_db = ighv, nproc = 2)
bug major resolved
#38: inferGenotypeBayesian example in the Vignette generates incorrect output
bug major new
#36: Tigger alleles not found
bug major resolved
#23: `GermlineIGHV` contains an allele that is not found in IMGT reference
bug minor resolved
#30: install_dep.R finds two versions of alakazam, warns version could not be detected then test server set up fails
bug major resolved
#29: Use alakazam::cpuCount for nproc detection
bug minor resolved
  2. 1
  3. 2