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Issues (1–23 of 23)

Title T P Status Votes Assignee Milestone Created Updated Actions
#24: Release notes for v0.3.0 missing an important "Backwards Incompatible Refactors"
task major resolved
#32: Review NEWS and vignettes
task major resolved
#27: Add to news new arguments for airr compatibility
task major resolved
#26: Document description and return for subsampleDb
task major resolved
#25: Can updateAlleleNames be removed?
proposal major open
#19: Add an argument to inferGenotype to use the bayesian method
proposal major resolved
#31: Inconsistency in novel allele between genotype plot and evidence plot
enhancement major open
#16: Add to inferGenotype output table info from findNovelAlleles output
enhancement major resolved
#13: Add additional evidence columns to findNovelAlleles output
enhancement major resolved
#12: Modify reassignAlleles to output a db
enhancement major resolved
#39: Error in findNovelAlleles(db, germline_db = ighv, nproc = 2)
bug major resolved
#38: inferGenotypeBayesian example in the Vignette generates incorrect output
bug major new
#36: Tigger alleles not found
bug major resolved
#30: install_dep.R finds two versions of alakazam, warns version could not be detected then test server set up fails
bug major resolved
#28: Change airr variable names for alakazam style version
bug major resolved
#22: Novel alleles should maintain dots for IMGT-gaps
bug major resolved
#20: itigger summary data.frame doesn't report all novel alleles
bug major resolved
#18: selectNovel removes all identical novel alleles
bug major resolved
#17: Fix plot function in expected build failure 603c736
bug major resolved
#9: Temporary workaround for weird dplyr bug
bug major resolved
#11: inferNovelAlleles multiprocessing fails
bug major resolved
#8: Few lingering check issue
bug major resolved
#6: R CMD check issues
bug major resolved