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Daniel Blankenberg committed a7c95be Merge

merge

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  • Parent commits 3bd28e1, 71dd469

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File tools/gatk/unified_genotyper.xml

    -p 'java 
     -jar "${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk/GenomeAnalysisTK.jar"
     -T "UnifiedGenotyper"
+    --num_threads 4 ##hard coded, for now
     -o "${output_vcf}"
     -et "NO_ET" ##ET no phone home
     ##-log "${output_log}" ##don't use this to log to file, instead directly capture stdout