Commits

Author Commit Message Labels Comments Date
Daniel Blankenberg
Update tests for samtools rmdup.
Nate Coraor
Merged in jmchilton/umn-galaxy-central (pull request #4)
John Chilton
Small whitespace fix for bug introduced by last merge.
John Chilton
Merged latest galaxy-central.
John Chilton
Merged latest galaxy-central changes.
John Chilton
Added API for assigning roles to a data library.
John Chilton
$ hg diff lib/galaxy/web/buildapp.py
John Chilton
Enhancements to Galaxy's functional testing framework as outlined in issue 490. https://bitbucket.org/galaxy/galaxy-central/issue/490/enabling-iterative-test-driven-development
Daniel Blankenberg
Add samtools rmdup tool.
jeremy goecks
Trackster: add mode parameter to draw_tile and use to support better overview drawing.
Daniel Blankenberg
Add basic VCF4.1 support.
Daniel Blankenberg
Update FIMO test datasets.
Daniel Blankenberg
Add SICER to tool_conf.xml.main.
Daniel Blankenberg
Update for wavelet variance tool contributed by Erika Kvikstad.
Nate Coraor
Missing import in library_contents.py
Greg Von Kuster
Add a guid to tool shed repository tool metadata and add some fixes for previewing tool shed repository tools.
Daniel Blankenberg
Add wavelet variance tool contributed by Erika Kvikstad.
Nate Coraor
Properly handle error conditions in library_common.upload_dataset when uploading via the API.
Nate Coraor
It turns out that our old version of SQLAlchemy already has the Postgres/MySQL BIGINT types, it just needed the BigInteger SQLAlchemy type and SQLite BIGINT. And fix a bug found by Jack Zhu.
jeremy goecks
Trackster: add left_offset attribute to LineTrack so that line tracks can be set in overview.
jeremy goecks
Trackster: introduce collections of tracks. Track 'groups' can be created and tracks can be added or removed from groups. Currently groups do not have a dropdown menu and cannot be saved.
Greg Von Kuster
Eliminate the code for the long-unused tool shed datatypes.
Nate Coraor
Fix uploading sorted BAMs to libraries when using the link method rather than copying.
Daniel Blankenberg
Add SICER peak caller.
Nate Coraor
API enhancements: Rename the 'contents' controller to 'library_contents', move (some) sanity and security checks to galaxy.web.api.util, add some enhancements to the histories code and some sample scripts for histories.
Nate Coraor
Fix SOAPdenovo binary name
jeremy goecks
Trackster: treat numbers as floats when dynamically filtering. Pack scripts.
jeremy goecks
Trackster: create a set of shared functions for managing the user interface and use functions in both visualization editor and display.
Nate Coraor
John Duddy
APIs to add histories, add items to histories, and list the status of datasets within a history
  1. Prev
  2. Next