Summary
Globals
Reference size | 23,264,337 |
Number of reads | 6,649,159 |
Number/percentage of mapped reads | 6,481,948 / 97.49% |
Number/percentage of unmapped reads | 167,211/2.51% |
Number/percentage of paired reads | 6,481,948/97.49% |
Number/percentage of reads both mates paired | 6,442,507/96.89% |
Number/percentage of singletons | 39,441/0.59% |
Read min/max/mean size | 76/76/76 |
ACGT Content
Number/percentage of A's | 193,766,502 / 39.6% |
Number/percentage of C's | 50,669,578 / 10.36% |
Number/percentage of T's | 193,981,319 / 39.65% |
Number/percentage of G's | 50,870,741 / 10.4% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 20.75% |
Coverage
Mean | 21.03 |
Standard Deviation | 10 |
Mapping Quality
Mean Mapping Quality | 53.73 |
Insert size
Mean | 177.13 |
Median Estimation | 354 |
Per chromosome statistics
Name | Length | Mapped bases | Mean coverage | Standard deviation |
MAL1 | 643292 | 14156303 | 22.01 | 10.1 |
MAL2 | 947102 | 19638269 | 20.74 | 9.71 |
MAL3 | 1060087 | 23125362 | 21.81 | 9.83 |
MAL4 | 1204112 | 26691925 | 22.17 | 13.5 |
MAL5 | 1343552 | 28354233 | 21.1 | 9.95 |
MAL6 | 1418244 | 30426474 | 21.45 | 9.91 |
MAL7 | 1501717 | 32782891 | 21.83 | 9.55 |
MAL8 | 1419563 | 29538054 | 20.81 | 9.62 |
MAL9 | 1541723 | 31382882 | 20.36 | 9.71 |
MAL10 | 1687655 | 35633830 | 21.11 | 10.2 |
MAL11 | 2038337 | 41616969 | 20.42 | 9.52 |
MAL12 | 2271477 | 47845286 | 21.06 | 10.07 |
MAL13 | 2895605 | 60752044 | 20.98 | 9.67 |
MAL14 | 3291871 | 67343618 | 20.46 | 9.46 |