1. Konstantin Okonechnikov Avatar Konstantin Okonechnikov
  2. Untitled project
  3. Qualimap

Issues

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Issues (1–25 of 83)

Title T P Status Votes Assignee Created Updated Actions
#59: confused mean mapping quality in bamqc
proposal major new 1
#82: Odd coverage histogram
bug minor open
#79: New issues aren't visible for everyone
bug major resolved
#83: graphics across reference code
bug major open
#81: Qualimap assigns more reads to exonic regions than total reads in the sample
bug major open 1
#69: Chromosomes from reads are not found in annotations
bug major resolved
#66: Release Versioning
proposal minor new 2
#70: RNA-seq QC: add 5', 3' UTR + CDS regions for the exons in Reads Genomic Origin histogram
proposal major new
#74: ignoring option MaxPermSize=1024m; support was removed in 8.0
bug minor open
#80: mean insert size
bug minor open
#75: An issue with Qualimap counts tool. Figure margins too large
bug major resolved
#77: Qualimap Clustering - the condition has length > 1, (clusters, location)
bug major resolved
#76: out of memory
bug major open
#78: Reads genomic origin is not equal to aligner report
bug major open
#73: qualimap version 2.3 fails to run on ubuntu 22.04
bug major closed
#72: Support hg38 in BAM QC
enhancement major resolved
#71: Globals (inside of regions) to genome_results.txt
enhancement trivial resolved
#34: feature request: cram compatibility
proposal major new 1
#68: Multi-sample BAM QC generates weird spikes in Insert Size plot
bug minor resolved 1
#67: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
bug critical new 1
#60: Allow controlling more figure settings from configuration
proposal major new
#65: Y-axis incorrect fo Mapped Reads Clipping Profile
bug major new
#39: BAM QC: allow to control the maximum coverage for Global Fraction
proposal major new 1
#64: multi-bamqc ignores group names if each group consists of one sample only
bug minor new
#63: Intended effects of bamqc --collect-overlap-pairs
proposal minor new
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