1. Konstantin Okonechnikov Avatar Konstantin Okonechnikov
  2. Untitled project
  3. Qualimap

Issues

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Issues (1–25 of 59)

Title T P Status Votes Assignee Created Updated Actions
#75: An issue with Qualimap counts tool. Figure margins too large
bug major resolved
#77: Qualimap Clustering - the condition has length > 1, (clusters, location)
bug major resolved
#76: out of memory
bug major open
#79: New issues aren't visible for everyone
bug major resolved
#78: Reads genomic origin is not equal to aligner report
bug major open
#73: qualimap version 2.3 fails to run on ubuntu 22.04
bug major closed
#72: Support hg38 in BAM QC
enhancement major resolved
#70: RNA-seq QC: add 5', 3' UTR + CDS regions for the exons in Reads Genomic Origin histogram
proposal major new
#69: Chromosomes from reads are not found in annotations
bug major new
#34: feature request: cram compatibility
proposal major new 1
#60: Allow controlling more figure settings from configuration
proposal major new
#65: Y-axis incorrect fo Mapped Reads Clipping Profile
bug major new
#39: BAM QC: allow to control the maximum coverage for Global Fraction
proposal major new 1
#59: confused mean mapping quality in bamqc
proposal major new
#16: Report how to fix when RAM is not enough
enhancement major resolved
#61: Include raw-data for Multi QC
proposal major new
#57: Mapped to reverse strand read
bug major resolved
#58: BamQC fails for single-ende data
bug major resolved
#56: Support for 3-column BED files
enhancement major new
#54: RNA-seq QC: allow to control number of process
proposal major new
#52: RNA-seq QC: add support for rRNA rate
proposal major new
#53: RNA-seq QC: report number of genes detected
proposal major new
#41: html and pdf at the same time
enhancement major resolved
#49: Struggling to compile from source...
bug major new
#50: GTF parser breaks..
bug major resolved
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