1. Konstantin Okonechnikov Avatar Konstantin Okonechnikov
  2. Untitled project
  3. Qualimap

Issues

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Issues (1–25 of 26)

Title T P Status Votes Assignee Created Updated Actions
#70: RNA-seq QC: add 5', 3' UTR + CDS regions for the exons in Reads Genomic Origin histogram
proposal major new
#16: Report how to fix when RAM is not enough
enhancement major resolved
#57: Mapped to reverse strand read
bug major resolved
#56: Support for 3-column BED files
enhancement major new
#47: Qualimap Java error
bug major new
#45: Qualimap ignoring -c threads option
bug major new
#38: Empty files in downloads
bug major resolved
#35: Multisample BAM-QC: global statistics values computation
proposal major new
#30: Slow PDF format output
bug major new
#22: BAM QC: add an option combine coverage of overlapping reads from a pair
proposal major resolved
#21: BAM QC: add report of overlapping paired-end reads
proposal major resolved
#26: BAM QC: add an option to control skip-duplicates operation
proposal major resolved 1
#31: QualiMap stuck in endless loop
bug major resolved 1
#7: BAM QC: add support for paired-end reads when computing duplication rate
enhancement major new
#25: RNA-seq QC and compute counts: read overlapping non-exonic region proportion
proposal major new
#23: Multisample BAM QC: add groups fix
proposal major new
#13: BAM QC: add an option to exclude duplicated reads from analysis
proposal major resolved
#18: BAM QC: add name of the chromosome to the coverage plot
proposal major resolved
#4: CountsQC: better input parsing
bug major resolved
#17: Multisample BAM-QC: add multi-thread support
proposal major new
#2: Multisample BAM-QC: introduce bar plots
proposal minor new
#1: Configuration file
enhancement minor new
#15: Warnings should be less
enhancement major resolved
#14: Problem with coverage STD
bug major resolved
#8: BAM QC: add report about relative number of insertions/deltions
enhancement major resolved
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