HTTPS SSH

CEN-PK Genome

Prepare CEN-PK genome annotation files for RNA-Seq

  1. Create conda environment conda env create -f environment.yml source activate jhongmin_saccer_cenpk_genome

  2. Download genome files from YeastGenome cd data wget "https://downloads.yeastgenome.org/sequence/strains/CEN.PK/CEN.PK2-1Ca/CEN.PK2-1Ca_SGD_2015_JRIV01000000/CEN.PK2-1Ca.README" wget "https://downloads.yeastgenome.org/sequence/strains/CEN.PK/CEN.PK2-1Ca/CEN.PK2-1Ca_SGD_2015_JRIV01000000/CEN.PK2-1Ca_JRIV01000000_SGD.gff.gz" wget "https://downloads.yeastgenome.org/sequence/strains/CEN.PK/CEN.PK2-1Ca/CEN.PK2-1Ca_SGD_2015_JRIV01000000/CEN.PK2-1Ca_JRIV01000000_SGD_cds.fsa.gz" wget "https://downloads.yeastgenome.org/sequence/strains/CEN.PK/CEN.PK2-1Ca/CEN.PK2-1Ca_SGD_2015_JRIV01000000/CEN.PK2-1Ca_JRIV01000000_SGD_pep.fsa.gz" wget "https://downloads.yeastgenome.org/sequence/strains/CEN.PK/CEN.PK2-1Ca/CEN.PK2-1Ca_SGD_2015_JRIV01000000/CEN.PK2-1Ca_SGD_2015_JRIV01000000.fsa.gz"