ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences. This package has been tested with R 3.2

The following representations are supported.

1. Mismatch/Dimismatch kernel: build.mismatch.dictionary
2. Positional wildcard kernel: build.wildcard.dictionary

After the dictionary is built, use the build.features.kernels to determine the feature matrix and kernel for DNA Sequences.

Contact manu@cbio.mskcc.org for any queries.