IdentiPy is a search engine for bottom-up proteomics written in Python.

How to install

$ hg clone
$ cd identipy
$ pip install .


  • Python 2.7
  • scipy
  • pyteomics
  • lxml

Not strictly required, but highly recommended:

  • cython
  • pyteomics.cythonize

How to use

For help on command-line usage, run:

$ identipy --help

Search parameters can be specified using command-line options or in a configuration file. Allowed parameters and their default values are listed in the default configuration file.

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