-vmods command line arg

Issue #10 new
created an issue


as I understand, -vmods in the command line exclusively supports the "mass@aa,mass@aa" notation.
When trying to describe a heavy labeled C terminal AA does it support something like "-mass@aa" or "mass@-aa"?
The way i understand the comments in the .cfg this is what "-anyctermmodification" is meant to describe.


Comments (1)

  1. Lev Levitsky repo owner

    Hi Jonas,

    you can put [ or ] instead of "aa" to specify the N- or C-terminus, respectively: -vmods 229.163@[.

    You can also specify both the type and terminal location of the amino acid, like 229.163@K], although I don't think that would be needed for processing of TMT data.

    Sorry about somewhat scarce documentation on this, we'll definitely expand it.

  2. Log in to comment